To respond to you points in order:
In my personal view, there was a tremendous failure to capitalize on the crisis by global health security organizations, which were focused on stopping spread, but waited until around mid 2021 to start looking past COVID. This was largely a capacity issue, but it was also a strategic failure, and by the time anyone was seriously looking at things like the pandemic treaty, the window had closed.
Thanks for writing and posting this!
I think it's important to say this because people often over-update on the pushback to things that they hear about, because of visible second order effects, but they don't notice the counterfactual is the thing in question not happening, which far outweighs those real but typically comparatively minor problems created.
Not to answer the question, but to add a couple links that I know you're aware of but didn't explicitly mention, there are two reasons that EA does better than most groups. First, the fact that EA is adjacent to and overlaps with the lesswrong-style rationality community, and the multiple years of texts on better probabilistic reasoning and why and how to reason more explicitly had a huge impact. And second, the similarly adjacent forecasting community, which was kickstarted in a real sense by people affiliated with FHI (Matheny and IARPA, Robin Hanson, and Tetlock's later involvement.)
Both of these communities have spent time thinking about better probabilistic reasoning, and have lots of things to say about not just the issue of thinking probabilistically in general instead of implicitly asserting certainty based on which side of 50% things are. And many in EA, including myself, have long-advocated the ideas being even more centrally embraced in EA discussions. (Especially because I will claim that the concerns of the rationality community keep being relevant to EA's failures, or being prescient of later-embraced EA concerns and ideas.)
I've said much the same, explicitly focused on this.
See: https://forum.effectivealtruism.org/posts/jGYoDrtf8JGw85k8T/my-personal-priorities-charity-judaism-and-effective:
To quote the most relevant part. "Lastly, local organizations or those where I have personal affiliations or feel responsibilities towards are also important to me - but... this is conceptually separate from giving charity effectively, and as I mentioned, I donate separately from the 10% dedicated to charity. I give to other organizations, including my synagogue and other local community organizations, especially charities that support the local poor around Jewish holidays, and other personally meaningful projects. But in the spirit of purchasing fuzzies separately, this is done with a smaller total amount, separate from my effective giving. "